IL_7LS2_180

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

7LS2|1|A2|G|4695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_180 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.2054

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7LS2|1|A2|G|4646
7LS2|1|A2|U|4647
7LS2|1|A2|U|4648
*
7LS2|1|A2|G|4691
7LS2|1|A2|U|4692
7LS2|1|A2|C|4693
7LS2|1|A2|A|4694
7LS2|1|A2|G|4695
7LS2|1|A2|C|4696

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain Q2

60S ribosomal protein L24

Chain X2

60S ribosomal protein L31