IL_7LS2_223
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7LS2|1|m2|A|630, 7LS2|1|m2|U|632, 7LS2|1|m2|U|633
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_223 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.2358
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7LS2|1|m2|G|613
7LS2|1|m2|PSU|614
7LS2|1|m2|G|615
7LS2|1|m2|C|616
7LS2|1|m2|C|617
7LS2|1|m2|A|618
7LS2|1|m2|G|619
*
7LS2|1|m2|C|626
7LS2|1|m2|G|627
7LS2|1|m2|G|628
7LS2|1|m2|U|629
7LS2|1|m2|A|630
7LS2|1|m2|A|631
7LS2|1|m2|U|632
7LS2|1|m2|U|633
7LS2|1|m2|C|634
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain A
- Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein
- Chain E3
- 40S ribosomal protein S23
- Chain T3
- 40S ribosomal protein S30
- Chain m
- Elongation factor 2
- Chain q2
- 40S ribosomal protein S3
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