IL_7LS2_225

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_225 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1942

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7LS2|1|m2|G|667
7LS2|1|m2|U|668
7LS2|1|m2|U|669
7LS2|1|m2|A2M|670
7LS2|1|m2|A|671
7LS2|1|m2|A|672
7LS2|1|m2|A|673
*
7LS2|1|m2|U|1163
7LS2|1|m2|C|1164

Current chains

Chain m2

18S rRNA

Nearby chains

Chain E3

40S ribosomal protein S23

Chain F3

40S ribosomal protein S26