IL_7LS2_331
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7LS2|1|m2|C|1333, 7LS2|1|m2|U|1496, 7LS2|1|m2|G|1499
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_331 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1087
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
7LS2|1|m2|U|1331
7LS2|1|m2|G|1332
7LS2|1|m2|C|1333
7LS2|1|m2|A|1334
7LS2|1|m2|U|1335
7LS2|1|m2|G|1336
7LS2|1|m2|G|1337
*
7LS2|1|m2|U|1494
7LS2|1|m2|C|1495
7LS2|1|m2|U|1496
7LS2|1|m2|G|1497
7LS2|1|m2|U|1498
7LS2|1|m2|G|1499
7LS2|1|m2|A|1500
7LS2|1|m2|U|1501
7LS2|1|m2|G|1502
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain A
- Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein
- Chain C3
- 40S ribosomal protein S20
- Chain H3
- 40S ribosomal protein S29
- Chain m
- Elongation factor 2
- Chain q2
- 40S ribosomal protein S3
- Chain v2
- 40S ribosomal protein S10
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