IL_7M4Z_023

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

7M4Z|1|A|G|774, 7M4Z|1|A|A|786, 7M4Z|1|A|A|787

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_023 not in the Motif Atlas

Geometric match to IL_5TBW_033

Geometric discrepancy: 0.1053

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7M4Z|1|A|G|773
7M4Z|1|A|G|774
7M4Z|1|A|G|775
*
7M4Z|1|A|U|785
7M4Z|1|A|A|786
7M4Z|1|A|A|787
7M4Z|1|A|U|788
7M4Z|1|A|C|789

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain R

50S ribosomal protein L22