IL_7M4Z_094

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CCUAGUAC*GGACCAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_094 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.3393

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7M4Z|1|A|C|2647
7M4Z|1|A|C|2648
7M4Z|1|A|U|2649
7M4Z|1|A|A|2650
7M4Z|1|A|G|2651
7M4Z|1|A|U|2652
7M4Z|1|A|A|2653
7M4Z|1|A|C|2654
*
7M4Z|1|A|G|2659
7M4Z|1|A|G|2660
7M4Z|1|A|A|2661
7M4Z|1|A|C|2662
7M4Z|1|A|C|2663
7M4Z|1|A|A|2664
7M4Z|1|A|G|2665

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L14