IL_7M4Z_134

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7M4Z|1|a|A|569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_134 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1055

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7M4Z|1|a|C|566
7M4Z|1|a|G|567
7M4Z|1|a|U|568
7M4Z|1|a|A|569
7M4Z|1|a|A|570
7M4Z|1|a|A|571
7M4Z|1|a|G|572
*
7M4Z|1|a|C|877
7M4Z|1|a|G|878

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17