IL_7MPI_021

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

7MPI|1|A1|U|534, 7MPI|1|A1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_021 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.0968

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7MPI|1|A1|G|531
7MPI|1|A1|A|532
7MPI|1|A1|A|533
7MPI|1|A1|U|534
7MPI|1|A1|G|535
7MPI|1|A1|U|536
7MPI|1|A1|A|537
7MPI|1|A1|G|538
*
7MPI|1|A1|U|553
7MPI|1|A1|A|554
7MPI|1|A1|U|555
7MPI|1|A1|U|556
7MPI|1|A1|A|557
7MPI|1|A1|U|558
7MPI|1|A1|A|559
7MPI|1|A1|G|560
7MPI|1|A1|C|561

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain AS

60S ribosomal protein L20-A