IL_7MPI_054

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7MPI|1|A1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_054 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2389

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7MPI|1|A1|U|1218
7MPI|1|A1|C|1219
7MPI|1|A1|U|1220
7MPI|1|A1|A|1221
7MPI|1|A1|G|1222
7MPI|1|A1|A|1223
7MPI|1|A1|C|1224
7MPI|1|A1|A|1225
7MPI|1|A1|G|1226
*
7MPI|1|A1|C|1283
7MPI|1|A1|C|1284
7MPI|1|A1|G|1285
7MPI|1|A1|A|1286
7MPI|1|A1|A|1287

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AS

60S ribosomal protein L20-A