IL_7MPI_115

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7MPI|1|A1|A|3142, 7MPI|1|A1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_115 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.095

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7MPI|1|A1|C|3004
7MPI|1|A1|A|3005
7MPI|1|A1|A|3006
7MPI|1|A1|U|3007
*
7MPI|1|A1|A|3139
7MPI|1|A1|G|3140
7MPI|1|A1|A|3141
7MPI|1|A1|A|3142
7MPI|1|A1|C|3143
7MPI|1|A1|G|3144

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A