IL_7MPI_120

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

7MPI|1|A1|U|3056, 7MPI|1|A1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_120 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1196

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7MPI|1|A1|U|3054
7MPI|1|A1|U|3055
7MPI|1|A1|U|3056
7MPI|1|A1|U|3057
7MPI|1|A1|U|3058
7MPI|1|A1|G|3059
*
7MPI|1|A1|C|3084
7MPI|1|A1|G|3085
7MPI|1|A1|A|3086
7MPI|1|A1|A|3087
7MPI|1|A1|G|3088

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

60S ribosomal protein L24-A

Chain Ad

60S ribosomal protein L31-A