IL_7MPI_239

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_239 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0678

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7MPI|1|A1|G|1444
7MPI|1|A1|U|1445
7MPI|1|A1|A|1446
7MPI|1|A1|G|1447
7MPI|1|A1|U|1448
7MPI|1|A1|A2M|1449
7MPI|1|A1|OMG|1450
*
7MPI|1|A1|C|2354
7MPI|1|A1|G|2355
7MPI|1|A1|A|2356
7MPI|1|A1|A|2357
7MPI|1|A1|A|2358
7MPI|1|A1|C|2359

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4-A

Chain AP

60S ribosomal protein L17-A