IL_7MQ8_048

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ8_048 not in the Motif Atlas

Homologous match to IL_4V88_418

Geometric discrepancy: 0.1621

The information below is about IL_4V88_418

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7MQ8|1|L1|C|676
7MQ8|1|L1|G|677
7MQ8|1|L1|U|678
7MQ8|1|L1|A|679
7MQ8|1|L1|G|680
*
7MQ8|1|L1|U|1025
7MQ8|1|L1|C|1026
7MQ8|1|L1|A|1027
7MQ8|1|L1|A|1028
7MQ8|1|L1|G|1029

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NF

40S ribosomal protein S13

Chain NO

40S ribosomal protein S15a

Chain NY

KRR1 small subunit processome component homolog