IL_7MQ8_089
3D structure
- PDB id
- 7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUAUGGU*AACGUC
- Length
- 14 nucleotides
- Bulged bases
- 7MQ8|1|L1|G|113, 7MQ8|1|L1|G|114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQ8_089 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3988
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7MQ8|1|L1|G|108
7MQ8|1|L1|U|109
7MQ8|1|L1|U|110
7MQ8|1|L1|A|111
7MQ8|1|L1|U|112
7MQ8|1|L1|G|113
7MQ8|1|L1|G|114
7MQ8|1|L1|U|115
*
7MQ8|1|L1|A|348
7MQ8|1|L1|A|349
7MQ8|1|L1|C|350
7MQ8|1|L1|G|351
7MQ8|1|L1|U|352
7MQ8|1|L1|C|353
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L4
- 40S ribosomal protein S4, X isoform
- Chain L8
- 40S ribosomal protein S8
- Chain LD
- 40S ribosomal protein S11
Coloring options: