IL_7MSM_090

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GUGUAGGAUAG*UC

Length

13 nucleotides

Bulged bases

7MSM|1|A|G|2353, 7MSM|1|A|A|2356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_090 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.3047

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7MSM|1|A|G|2347
7MSM|1|A|U|2348
7MSM|1|A|G|2349
7MSM|1|A|U|2350
7MSM|1|A|A|2351
7MSM|1|A|G|2352
7MSM|1|A|G|2353
7MSM|1|A|A|2354
7MSM|1|A|U|2355
7MSM|1|A|A|2356
7MSM|1|A|G|2357
*
7MSM|1|A|U|2415
7MSM|1|A|C|2416

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L1

Chain x

Energy-dependent translational throttle protein EttA