IL_7MSM_178

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_178 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0888

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7MSM|1|a|C|1295
7MSM|1|a|G|1296
7MSM|1|a|G|1297
7MSM|1|a|A|1298
7MSM|1|a|U|1299
7MSM|1|a|C|1300
*
7MSM|1|a|G|1321
7MSM|1|a|U|1322
7MSM|1|a|G|1323
7MSM|1|a|A|1324
7MSM|1|a|A|1325
7MSM|1|a|G|1326

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13