IL_7N2C_168

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

7N2C|1|23|U|2689, 7N2C|1|23|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_168 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0786

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7N2C|1|23|U|2687
7N2C|1|23|G|2688
7N2C|1|23|U|2689
7N2C|1|23|U|2690
7N2C|1|23|C|2691
*
7N2C|1|23|G|2718
7N2C|1|23|G|2719
7N2C|1|23|U|2720
7N2C|1|23|A|2721
7N2C|1|23|G|2722

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LQ

50S ribosomal protein L17

Chain LS

50S ribosomal protein L19