IL_7NAC_084

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7NAC|1|1|A|3142, 7NAC|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAC_084 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0876

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7NAC|1|1|C|3004
7NAC|1|1|A|3005
7NAC|1|1|A|3006
7NAC|1|1|U|3007
*
7NAC|1|1|A|3139
7NAC|1|1|G|3140
7NAC|1|1|A|3141
7NAC|1|1|A|3142
7NAC|1|1|C|3143
7NAC|1|1|G|3144

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A