IL_7NAC_092

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AUAU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAC_092 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2271

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7NAC|1|1|A|3168
7NAC|1|1|U|3169
7NAC|1|1|A|3170
7NAC|1|1|U|3171
*
7NAC|1|1|A|3279
7NAC|1|1|U|3280
7NAC|1|1|U|3281
7NAC|1|1|U|3282

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain f

60S ribosomal protein L33-A