IL_7NRD_006
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_006 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1549
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|C|82
7NRD|1|LA|U|83
7NRD|1|LA|U|84
7NRD|1|LA|A|85
7NRD|1|LA|G|86
7NRD|1|LA|U|87
7NRD|1|LA|A|88
7NRD|1|LA|A|89
*
7NRD|1|LA|U|97
7NRD|1|LA|G|98
7NRD|1|LA|A|99
7NRD|1|LA|A|100
7NRD|1|LA|G|101
7NRD|1|LA|C|102
7NRD|1|LA|G|103
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain LS
- 60S ribosomal protein L18-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lq
- 60S ribosomal protein L42-A
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