IL_7NRD_021

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

7NRD|1|LA|U|534, 7NRD|1|LA|U|558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_021 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1671

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7NRD|1|LA|G|531
7NRD|1|LA|A|532
7NRD|1|LA|A|533
7NRD|1|LA|U|534
7NRD|1|LA|G|535
7NRD|1|LA|U|536
7NRD|1|LA|A|537
7NRD|1|LA|G|538
*
7NRD|1|LA|U|553
7NRD|1|LA|A|554
7NRD|1|LA|U|555
7NRD|1|LA|U|556
7NRD|1|LA|A|557
7NRD|1|LA|U|558
7NRD|1|LA|A|559
7NRD|1|LA|G|560
7NRD|1|LA|C|561

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LO

60S ribosomal protein L14-A

Chain LU

60S ribosomal protein L20-A