IL_7NRD_033
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 7NRD|1|LA|G|908, 7NRD|1|LA|A|920, 7NRD|1|LA|A|921, 7NRD|1|LA|U|922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_033 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.1624
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7NRD|1|LA|G|907
7NRD|1|LA|G|908
7NRD|1|LA|G|909
*
7NRD|1|LA|U|919
7NRD|1|LA|A|920
7NRD|1|LA|A|921
7NRD|1|LA|U|922
7NRD|1|LA|C|923
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain Ll
- 60S ribosomal protein L37-A
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