IL_7NRD_053
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 7NRD|1|LA|A|1221
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_053 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.2144
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7NRD|1|LA|U|1218
7NRD|1|LA|C|1219
7NRD|1|LA|U|1220
7NRD|1|LA|A|1221
7NRD|1|LA|G|1222
7NRD|1|LA|A|1223
7NRD|1|LA|C|1224
7NRD|1|LA|A|1225
7NRD|1|LA|G|1226
*
7NRD|1|LA|C|1283
7NRD|1|LA|C|1284
7NRD|1|LA|G|1285
7NRD|1|LA|A|1286
7NRD|1|LA|A|1287
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LU
- 60S ribosomal protein L20-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
Coloring options: