IL_7NRD_060

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_060 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1292

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7NRD|1|LA|G|1444
7NRD|1|LA|U|1445
7NRD|1|LA|A|1446
7NRD|1|LA|G|1447
7NRD|1|LA|U|1448
7NRD|1|LA|A|1449
7NRD|1|LA|G|1450
*
7NRD|1|LA|C|2354
7NRD|1|LA|G|2355
7NRD|1|LA|A|2356
7NRD|1|LA|A|2357
7NRD|1|LA|A|2358
7NRD|1|LA|C|2359

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain LR

60S ribosomal protein L17-A