IL_7NRD_066

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

7NRD|1|LA|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_066 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.3206

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7NRD|1|LA|U|1627
7NRD|1|LA|C|1628
7NRD|1|LA|U|1629
7NRD|1|LA|U|1630
7NRD|1|LA|C|1631
*
7NRD|1|LA|G|1811
7NRD|1|LA|G|1812
7NRD|1|LA|A|1813
7NRD|1|LA|A|1814
7NRD|1|LA|U|1815
7NRD|1|LA|A|1816

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lb

60S ribosomal protein L27-A