IL_7NRD_067

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_067 not in the Motif Atlas

Geometric match to IL_5TBW_067

Geometric discrepancy: 0.1841

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7NRD|1|LA|U|1645
7NRD|1|LA|G|1646
7NRD|1|LA|A|1647
7NRD|1|LA|A|1648
7NRD|1|LA|U|1649
*
7NRD|1|LA|A|1806
7NRD|1|LA|G|1807
7NRD|1|LA|G|1808
7NRD|1|LA|A|1809
7NRD|1|LA|A|1810

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Lb

60S ribosomal protein L27-A

Chain Li

60S ribosomal protein L34-A