IL_7NRD_113

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7NRD|1|LA|A|3142, 7NRD|1|LA|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_113 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1808

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7NRD|1|LA|C|3004
7NRD|1|LA|A|3005
7NRD|1|LA|A|3006
7NRD|1|LA|U|3007
*
7NRD|1|LA|A|3139
7NRD|1|LA|G|3140
7NRD|1|LA|A|3141
7NRD|1|LA|A|3142
7NRD|1|LA|C|3143
7NRD|1|LA|G|3144

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A