IL_7NRD_153

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

7NRD|1|S2|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_153 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1861

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7NRD|1|S2|U|113
7NRD|1|S2|C|114
7NRD|1|S2|G|115
7NRD|1|S2|U|116
*
7NRD|1|S2|A|300
7NRD|1|S2|A|301

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SV

40S ribosomal protein S8-A

Chain SX

40S ribosomal protein S11-A