IL_7NRD_175
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7NRD|1|S2|A|579, 7NRD|1|S2|U|581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_175 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.185
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|G|562
7NRD|1|S2|U|563
7NRD|1|S2|G|564
7NRD|1|S2|C|565
7NRD|1|S2|C|566
7NRD|1|S2|A|567
7NRD|1|S2|G|568
*
7NRD|1|S2|C|575
7NRD|1|S2|G|576
7NRD|1|S2|G|577
7NRD|1|S2|U|578
7NRD|1|S2|A|579
7NRD|1|S2|A|580
7NRD|1|S2|U|581
7NRD|1|S2|U|582
7NRD|1|S2|C|583
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain S3
- mRNA (32-MER)
- Chain SA
- 40S ribosomal protein S3
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
- Chain Sh
- Multiprotein-bridging factor 1
- Chain Sn
- Transfer RNA; tRNA
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