IL_7NRD_176
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 7NRD|1|S2|A|619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_176 not in the Motif Atlas
- Homologous match to IL_4V88_416
- Geometric discrepancy: 0.1887
- The information below is about IL_4V88_416
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.3
- Basepair signature
- cWW-L-cWW-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|G|616
7NRD|1|S2|U|617
7NRD|1|S2|U|618
7NRD|1|S2|A|619
7NRD|1|S2|A|620
7NRD|1|S2|A|621
7NRD|1|S2|A|622
*
7NRD|1|S2|U|1104
7NRD|1|S2|C|1105
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Se
- 40S ribosomal protein S26-B
Coloring options: