IL_7NRD_191
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_191 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.1343
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7NRD|1|S2|G|885
7NRD|1|S2|U|886
7NRD|1|S2|A|887
7NRD|1|S2|U|888
*
7NRD|1|S2|A|924
7NRD|1|S2|G|925
7NRD|1|S2|A|926
7NRD|1|S2|C|927
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain Lr
- 60S ribosomal protein L43-A
- Chain SQ
- 40S ribosomal protein S1-A
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Se
- 40S ribosomal protein S26-B
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