IL_7NRD_205
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7NRD|1|S2|G|1228, 7NRD|1|S2|U|1257
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_205 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2693
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7NRD|1|S2|A|1224
7NRD|1|S2|U|1225
7NRD|1|S2|A|1226
7NRD|1|S2|A|1227
7NRD|1|S2|G|1228
7NRD|1|S2|G|1229
7NRD|1|S2|A|1230
7NRD|1|S2|U|1231
7NRD|1|S2|U|1232
7NRD|1|S2|G|1233
*
7NRD|1|S2|C|1252
7NRD|1|S2|U|1253
7NRD|1|S2|U|1254
7NRD|1|S2|G|1255
7NRD|1|S2|A|1256
7NRD|1|S2|U|1257
7NRD|1|S2|U|1258
7NRD|1|S2|U|1259
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SC
- 40S ribosomal protein S10-A
- Chain SD
- 40S ribosomal protein S12
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- Ubiquitin-40S ribosomal protein S31
Coloring options: