IL_7NWG_019
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 7NWG|1|51|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_019 not in the Motif Atlas
- Geometric match to IL_1U9S_005
- Geometric discrepancy: 0.3031
- The information below is about IL_1U9S_005
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
7NWG|1|51|C|339
7NWG|1|51|C|340
7NWG|1|51|G|341
7NWG|1|51|G|342
*
7NWG|1|81|C|32
7NWG|1|81|G|33
Current chains
- Chain 51
- 28S Ribosomal RNA
- Chain 81
- 5.8S Ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain L3
- L13
- Chain N3
- Ribosomal protein L15
- Chain j3
- Ribosomal protein L37
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