IL_7NWG_023

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCGC*GUCG

Length

9 nucleotides

Bulged bases

7NWG|1|51|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_023 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2139

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7NWG|1|51|C|447
7NWG|1|51|G|448
7NWG|1|51|C|449
7NWG|1|51|G|450
7NWG|1|51|C|451
*
7NWG|1|51|G|1296
7NWG|1|51|U|1297
7NWG|1|51|C|1298
7NWG|1|51|G|1299

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain e3

eL32

Chain f3

eL33