IL_7NWG_057

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

7NWG|1|51|A|1650, 7NWG|1|51|G|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_057 not in the Motif Atlas

Homologous match to IL_5TBW_028

Geometric discrepancy: 0.1917

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7NWG|1|51|G|1522
7NWG|1|51|A|1523
7NWG|1|51|A|1524
7NWG|1|51|A|1525
7NWG|1|51|G|1526
*
7NWG|1|51|C|1648
7NWG|1|51|U|1649
7NWG|1|51|A|1650
7NWG|1|51|G|1651
7NWG|1|51|U|1652
7NWG|1|51|A|1653
7NWG|1|51|G|1654
7NWG|1|51|C|1655

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

L13

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain j3

Ribosomal protein L37