3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUGUUG*CUAGCC
Length
12 nucleotides
Bulged bases
7NWG|1|51|U|1947, 7NWG|1|51|U|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NWG_077 not in the Motif Atlas
Geometric match to IL_4WF9_084
Geometric discrepancy: 0.3952
The information below is about IL_4WF9_084
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_05145.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
13

Unit IDs

7NWG|1|51|G|1946
7NWG|1|51|U|1947
7NWG|1|51|G|1948
7NWG|1|51|U|1949
7NWG|1|51|U|1950
7NWG|1|51|G|1951
*
7NWG|1|51|C|2031
7NWG|1|51|U|2032
7NWG|1|51|A|2033
7NWG|1|51|G|2034
7NWG|1|51|C|2035
7NWG|1|51|C|2036

Current chains

Chain 51
28S Ribosomal RNA

Nearby chains

Chain 71
5S ribosomal RNA; 5S rRNA
Chain H3
L9
Chain I3
60S ribosomal protein L10
Chain S3
60S ribosomal protein L18a
Chain m3
60S RIBOSOMAL PROTEIN EL40

Coloring options:


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