IL_7NWG_083

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_083 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1533

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7NWG|1|51|G|2358
7NWG|1|51|U|2359
7NWG|1|51|A|2360
7NWG|1|51|G|2361
7NWG|1|51|U|2362
7NWG|1|51|A|2363
7NWG|1|51|G|2364
*
7NWG|1|51|C|3858
7NWG|1|51|G|3859
7NWG|1|51|A|3860
7NWG|1|51|A|3861
7NWG|1|51|A|3862
7NWG|1|51|C|3863

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 1

Sec61Beta

Chain C3

uL4

Chain P3

uL22