IL_7NWG_128
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_128 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1785
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7NWG|1|51|C|4596
7NWG|1|51|U|4597
7NWG|1|51|C|4598
7NWG|1|51|A|4599
7NWG|1|51|G|4600
7NWG|1|51|U|4601
7NWG|1|51|A|4602
7NWG|1|51|C|4603
*
7NWG|1|51|G|4608
7NWG|1|51|G|4609
7NWG|1|51|A|4610
7NWG|1|51|A|4611
7NWG|1|51|C|4612
7NWG|1|51|C|4613
7NWG|1|51|G|4614
Current chains
- Chain 51
- 28S Ribosomal RNA
Nearby chains
- Chain B3
- uL3
- Chain H3
- L9
- Chain V3
- eL14
- Chain m3
- 60S RIBOSOMAL PROTEIN EL40
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