IL_7NWG_178
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCACUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 7NWG|1|A2|G|507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_178 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.2156
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7NWG|1|A2|C|491
7NWG|1|A2|C|492
7NWG|1|A2|A|493
7NWG|1|A2|C|494
7NWG|1|A2|U|495
7NWG|1|A2|C|496
*
7NWG|1|A2|G|506
7NWG|1|A2|G|507
7NWG|1|A2|A|508
7NWG|1|A2|G|509
Current chains
- Chain A2
- 18S Ribosomal RNA
Nearby chains
- Chain F2
- S4
- Chain K2
- 40S ribosomal protein S9
- Chain Z2
- 40S ribosomal protein S24
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