IL_7NWG_183
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7NWG|1|A2|U|627, 7NWG|1|A2|A|628, 7NWG|1|A2|U|630, 7NWG|1|A2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_183 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1899
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NWG|1|A2|G|611
7NWG|1|A2|U|612
7NWG|1|A2|G|613
7NWG|1|A2|C|614
7NWG|1|A2|C|615
7NWG|1|A2|A|616
7NWG|1|A2|G|617
*
7NWG|1|A2|C|624
7NWG|1|A2|G|625
7NWG|1|A2|G|626
7NWG|1|A2|U|627
7NWG|1|A2|A|628
7NWG|1|A2|A|629
7NWG|1|A2|U|630
7NWG|1|A2|U|631
7NWG|1|A2|C|632
Current chains
- Chain A2
- 18S Ribosomal RNA
Nearby chains
- Chain E2
- 40S ribosomal protein S3
- Chain Y2
- Ribosomal protein S23
- Chain f2
- 40S ribosomal protein S30
- Chain q3
- Transfer RNA; tRNA
- Chain v3
- mRNA
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