IL_7NWG_321

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

7NWG|1|51|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_321 not in the Motif Atlas

Geometric match to IL_8P9A_444

Geometric discrepancy: 0.2866

The information below is about IL_8P9A_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7NWG|1|51|G|4291
7NWG|1|51|A|4292
7NWG|1|51|U|4293
7NWG|1|51|C|4294
*
7NWG|1|51|G|4316
7NWG|1|51|A|4317
7NWG|1|51|C|4318

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain T3

eL21

Chain b3

eL29

Chain o3

eL42