IL_7O19_170

3D structure

PDB id

7O19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7O19|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O19_170 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0905

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7O19|1|BA|C|2636
7O19|1|BA|U|2637
7O19|1|BA|G|2638
7O19|1|BA|A|2639
7O19|1|BA|G|2640
*
7O19|1|BA|C|2774
7O19|1|BA|G|2775
7O19|1|BA|A|2776
7O19|1|BA|G|2777
7O19|1|BA|A|2778
7O19|1|BA|U|2779
7O19|1|BA|G|2780
7O19|1|BA|A|2781
7O19|1|BA|G|2782

Current chains

Chain BA

Ribosomal RNA 23S

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13