IL_7O80_032
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7O80|1|A2|A|629, 7O80|1|A2|U|631, 7O80|1|A2|U|632
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_032 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.11
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7O80|1|A2|G|612
7O80|1|A2|U|613
7O80|1|A2|G|614
7O80|1|A2|C|615
7O80|1|A2|C|616
7O80|1|A2|A|617
7O80|1|A2|G|618
*
7O80|1|A2|C|625
7O80|1|A2|G|626
7O80|1|A2|G|627
7O80|1|A2|OMU|628
7O80|1|A2|A|629
7O80|1|A2|A|630
7O80|1|A2|U|631
7O80|1|A2|U|632
7O80|1|A2|C|633
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AC
- Ribosomal protein S27a
- Chain AD
- 40S ribosomal protein S30
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain Ac
- 40S ribosomal protein S3
- Chain Aw
- 40S ribosomal protein S23
- Chain By
- Eukaryotic peptide chain release factor subunit 1
Coloring options: