IL_7O80_073
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 7O80|1|A2|U|1495, 7O80|1|A2|G|1498
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_073 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.097
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7O80|1|A2|U|1334
7O80|1|A2|G|1335
7O80|1|A2|G|1336
*
7O80|1|A2|U|1493
7O80|1|A2|C|1494
7O80|1|A2|U|1495
7O80|1|A2|G|1496
7O80|1|A2|U|1497
7O80|1|A2|G|1498
7O80|1|A2|A|1499
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- uS14
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain Ac
- 40S ribosomal protein S3
- Chain Aj
- Ribosomal protein eS10
- Chain At
- 40S ribosomal protein uS10
- Chain By
- Eukaryotic peptide chain release factor subunit 1
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