IL_7O80_077
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUGCU*A(OMG)AGG
- Length
- 11 nucleotides
- Bulged bases
- 7O80|1|A2|U|1398
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_077 not in the Motif Atlas
- Geometric match to IL_4WF9_084
- Geometric discrepancy: 0.346
- The information below is about IL_4WF9_084
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
7O80|1|A2|C|1396
7O80|1|A2|A|1397
7O80|1|A2|U|1398
7O80|1|A2|G|1399
7O80|1|A2|C|1400
7O80|1|A2|U|1401
*
7O80|1|A2|A|1447
7O80|1|A2|OMG|1448
7O80|1|A2|A|1449
7O80|1|A2|G|1450
7O80|1|A2|G|1451
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AF
- RACK1
- Chain Ap
- Ribosomal protein S16
- Chain Aq
- 40S ribosomal protein eS17
- Chain At
- 40S ribosomal protein uS10
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