IL_7O80_267

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

7O80|1|B5|U|4380

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_267 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.39

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7O80|1|B5|U|4378
7O80|1|B5|G|4379
7O80|1|B5|U|4380
7O80|1|B5|A|4381
7O80|1|B5|PSU|4382
7O80|1|B5|OMG|4383
7O80|1|B5|U|4384
*
7O80|1|B5|G|4407
7O80|1|B5|C|4408
7O80|1|B5|G|4409
7O80|1|B5|A|4410
7O80|1|B5|A|4411
7O80|1|B5|G|4412

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BW

eL24

Chain Bd

eL31