IL_7O80_338
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- (OMU)GAAC*GAA
- Length
- 8 nucleotides
- Bulged bases
- 7O80|1|B5|A|2260, 7O80|1|B5|A|2271
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_338 not in the Motif Atlas
- Homologous match to IL_8C3A_482
- Geometric discrepancy: 0.4106
- The information below is about IL_8C3A_482
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_04395.1
- Basepair signature
- cWW-cWS-tWH-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7O80|1|B5|OMU|2258
7O80|1|B5|G|2259
7O80|1|B5|A|2260
7O80|1|B5|A|2261
7O80|1|B5|C|2262
*
7O80|1|B5|G|2270
7O80|1|B5|A|2271
7O80|1|B5|A|2272
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BK
- Replicase polyprotein 1ab
- Chain BP
- uL22
- Chain BR
- 60S ribosomal protein L19
- Chain Bl
- eL39
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