IL_7OBR_151

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7OBR|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_151 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.231

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7OBR|1|5|C|4582
7OBR|1|5|C|4583
7OBR|1|5|A|4584
7OBR|1|5|U|4585
*
7OBR|1|5|A|4717
7OBR|1|5|G|4718
7OBR|1|5|G|4719
7OBR|1|5|C|4720
7OBR|1|5|G|4721

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

60S ribosomal protein L13a