IL_7OBR_169

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

7OBR|1|5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OBR_169 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1923

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7OBR|1|5|G|5000
7OBR|1|5|U|5001
7OBR|1|5|U|5002
*
7OBR|1|5|G|5045
7OBR|1|5|U|5046
7OBR|1|5|C|5047
7OBR|1|5|A|5048
7OBR|1|5|G|5049
7OBR|1|5|C|5050

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain d

eL31