IL_7OHS_027

3D structure

PDB id

7OHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.38 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

7OHS|1|1|A|933, 7OHS|1|1|G|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHS_027 not in the Motif Atlas

Geometric match to IL_5TBW_028

Geometric discrepancy: 0.2924

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7OHS|1|1|G|805
7OHS|1|1|A|806
7OHS|1|1|A|807
7OHS|1|1|A|808
7OHS|1|1|G|809
*
7OHS|1|1|C|931
7OHS|1|1|U|932
7OHS|1|1|A|933
7OHS|1|1|G|934
7OHS|1|1|U|935
7OHS|1|1|A|936
7OHS|1|1|G|937
7OHS|1|1|C|938

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain j

60S ribosomal protein L37-A